FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62698295
Sequences flagged as poor quality0
Sequence length8
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTAGTT1981746231.60765695462692No Hit
TCGAGCGC1771823428.259514871975387No Hit
GTACTTAA1615545625.766978192947672No Hit
CACGCACG900714314.365849980450026No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)