FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409878

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409878
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62489463
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCTCAG2428417938.86123809385272No Hit
TTGACTTC1370679521.934569993024265No Hit
CAATGGCA1336030621.38009411282667No Hit
GCCGAAGT1113818317.82409780029635No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)