FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409899

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409899
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73479236
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTCACG2311934731.463782503127824No Hit
ACCATTAA2217793530.182587908235735No Hit
CTGGACGT1760015423.952554433200692No Hit
GAACGGTC1058180014.401075155435747No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)