FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409911

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409911
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82580242
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGAAGGG2274980527.548726485931102No Hit
ATCTGATC2071316325.08246827370644Illumina PCR Primer Index 9 (100% over 8bp)
TCACTCCT1992092324.12311046509164No Hit
CGTGCTAA1919635123.24569477527082No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)