FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409914

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409914
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71450050
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TACCCGGC2189789330.647834396197066No Hit
AGATAACA2147161830.051228795501196No Hit
CTTATTTG1420345119.87885382865372No Hit
GCGGGCAT1387708819.42208297964802No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)