FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70903851
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TACCCGGC2179509130.738938284184307No Hit
AGATAACA2131479930.061553356248588No Hit
CTTATTTG1416242019.97411960035852No Hit
GCGGGCAT1363154119.225388759208577No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)