FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409958

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409958
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60419962
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACACAAT1784404929.533366803507754No Hit
ACATTCCG1465927224.262299271224304No Hit
CTGCGGTA1441699223.861305970367873No Hit
TGTGATGC1168009619.331518281987663No Hit
GGTGATGC6368481.0540357506348648No Hit
GACACAAA959590.1588200270632411No Hit
GACCCAAT731510.12107091361626476No Hit
GTGCGGTA671720.11117517750176673No Hit
GACACACT614700.10173789914002263No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)