FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409966

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409966
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58252475
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAAGTTG1491188125.598708037727153No Hit
ACTTCACT1468428425.208000175099855No Hit
TTCGTGAA1372360623.558837628787447No Hit
GAGCACGC1344936923.088064498547055No Hit
GTCGTGAA2148670.36885471389842234No Hit
ACTTCACA1111890.19087429332401756No Hit
CCTTCACT1054970.18110303467792568No Hit
CGAAGGTG920450.158010453633086No Hit
CGACGTTG628580.10790614476037284No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)