FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005409970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58040420
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAAGTTG1476775225.44390960644323No Hit
ACTTCACT1454652625.062751096563396No Hit
TTCGTGAA1371018623.621789780294492No Hit
GAGCACGC1334640122.995011062979902No Hit
GTCGTGAA2708330.4666282566528636No Hit
CCTTCACT1265820.2180928394384465No Hit
CGAAGGTG1114110.1919541588430959No Hit
ACTTCACA1110020.19124947751928742No Hit
TCTTCACT665250.1146183986952541No Hit
CGACGTTG646980.1114705923906133No Hit
GTGCACGC594230.10238209854442817No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)