FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409974

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409974
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63488418
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCGAAT1700872926.790286379477905No Hit
TGCGATCA1684331926.52975067042937No Hit
AAATCGTC1536130924.195450893106205No Hit
GCGATCGG1302008920.507817662112796No Hit
GGCGATCA1106880.17434361019989505No Hit
GCGATCGA663110.10444582191353391No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)