FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409986

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409986
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62922964
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGACGGAT1786663128.394452302024426No Hit
GTCGACTC1620091925.747227991357814No Hit
CCTTTAGA1390236322.094259577473178No Hit
TAGACTCG1353152721.504910353555502No Hit
GTCGACTA1013200.1610222938639699No Hit
GTCGTCTC974450.15486396985367695No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)