FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005409990

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409990
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57335533
Sequences flagged as poor quality0
Sequence length8
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGTCTT1927102333.61095989113767No Hit
ATGCCAAA1736314230.283388139079477No Hit
CCTTATCG1230584621.462861433589534No Hit
TGCAGGGC694784912.11787636124356No Hit
GAAGTCTA1300450.22681397241044224No Hit
GTAGTCTT1231560.21479873571594774No Hit
CCGTATCG1116540.19473787746945687No Hit
GCTTATCG786260.13713311080582438No Hit
TTGCCAAA597970.10429309168539516No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)