FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409994

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409994
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56931144
Sequences flagged as poor quality0
Sequence length8
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGTCTT1926887633.84593149928622No Hit
ATGCCAAA1711044630.054632311621916No Hit
CCTTATCG1208446321.226453836936773No Hit
TGCAGGGC687627212.078225584225043No Hit
GTAGTCTT1354160.23785926381525024No Hit
GAAGTCTA1291860.22691622005698675No Hit
CCGTATCG1141440.20049482933278137No Hit
GCTTATCG1026060.18022824203216434No Hit
TTGCCAAA789970.1387588487594769No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)