FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005410006

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410006
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56649221
Sequences flagged as poor quality0
Sequence length8
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAAGAC1939319834.23382997623216No Hit
GGATGAGT1771366431.26903369068394No Hit
AATCTTTG1753119630.94693217405408No Hit
TCGGCCCA6560331.1580618204794024No Hit
GGAGGAGT2485490.43875095828767No Hit
AATCTTTA883170.15590152598920998No Hit
CTCAAGAA706590.12473075313780572No Hit
AATCGTTG643450.11358496880301319No Hit
GGCTGAGT620570.10954607831235667No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)