FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410010

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410010
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56251261
Sequences flagged as poor quality0
Sequence length8
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAAGAC1922661334.179879096399276No Hit
GGATGAGT1763254031.346035069329382No Hit
AATCTTTG1730398630.761952163170175No Hit
TCGGCCCA6435341.144034797726579No Hit
GGAGGAGT2491380.4429020711197923No Hit
AATCTTTA867950.15429876318683772No Hit
AATCGTTG765350.13605917207793794No Hit
CTCAAGAA721750.12830823472561798No Hit
GGCTGAGT634830.11285613668287366No Hit
GGTTGAGT563610.10019508718213446No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)