FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410020

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410020
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences127853669
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGAACT3833336429.98221662297388No Hit
GCATTCGG3520341827.534147651249647No Hit
CAGCGGAA2744477421.46576959007723No Hit
ATTACTTC2493262819.500909277777552No Hit
CAGCGAAA1750620.13692372019452956No Hit
GCATTCGA1735610.1357497218167435No Hit
ATTACTTA1386850.10847166224068235No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)