FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410023

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410023
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences130935662
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCGAT4170026831.847907104177626No Hit
ACCCGACG3508411926.794930016850564No Hit
TGATATTC2822736021.55819092280604No Hit
GTGATCGA2381606918.18913857097236No Hit
TGTTATTC3537470.27016856568839126No Hit
ACCCGACA1955800.1493710705033133No Hit
CCTGCGAT1462800.11171899065970277No Hit
TGATATTA1314070.10035997679532105No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)