FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410029

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410029
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences129784721
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAGCAC3913423130.153188062869123No Hit
GACCTATT3140139424.194985170866147No Hit
ACTTAGGA2917722022.481244151998446No Hit
TTAGCTCG2796315621.545799678530727No Hit
GTAGCTCG2844110.21914058743478748No Hit
GACCTATA1990430.15336396955385834No Hit
TTAGCTCA1404210.10819532447120643No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)