FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410041

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410041
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences133867035
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCTCG3617438627.02262435258987No Hit
AATCTCTC3549237826.51315762689448No Hit
CGGAGGGA3372840925.19545532624966No Hit
TCAGAAAT2541261318.983473414496704No Hit
CATCTCTC4802850.3587776482836122No Hit
ACTCTCTC3242300.24220301883880524No Hit
TATCTCTC2491450.1861137807377298No Hit
GTCTCTCA2237170.16711881308195106No Hit
AATCTCTA1891610.14130513908820047No Hit
CGGAGGAA1378820.10299921859029747No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)