FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410044

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410044
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences146909598
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGTTAT4094314627.869619519345495No Hit
TAGACACC4013157427.317189990540985No Hit
ATTTGCTA3282368322.34277640593639No Hit
CCACAGGG2999795820.41933162188627No Hit
CCACAGGA6557600.4463697463796749No Hit
GGCGGTAT5153070.3507646927193961No Hit
TAGACACA1957670.13325678013222797No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)