FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410050

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410050
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences128792683
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCTTCG4219263432.76011728088621No Hit
CGTGCAGA3197764824.82877695777174No Hit
GTATGCTC2648815620.56650687213341No Hit
AACAAGAT2539569319.718273125811038No Hit
AACCAGAT6380000.4953697563703988No Hit
AACACGAT2390010.1855703246744227No Hit
TCGCGTCG2315670.1797982576385958No Hit
TCGCTTCA1594560.12380827566112589No Hit
GTATGCTA1293870.10046145245689153No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)