FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410053

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410053
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124947669
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGAAAT3312073026.50768138779764No Hit
TAGTGCGG3057512724.47034606143793No Hit
ACACCTTC3033956624.28181833468218No Hit
GGTATGCA2867958022.953273341978072No Hit
TAGTGCGA4210490.3369802761186365No Hit
ACACCTTA1990370.15929628907282778No Hit
ACCCCTTC1726920.13821146195212333No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)