FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410056

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410056
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences120413261
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCGATG3380735128.07610284717727No Hit
GCATCTCC3079167625.57166523378185No Hit
AACGTCAA2891271024.011234111498734No Hit
TGTAAGGT2500461920.7656688244661No Hit
GCCTCTCC3308890.274794484637369No Hit
GCATCTCA2130690.17694811869599644No Hit
GGTAAGGT1248490.10368376287060277No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)