FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410062

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410062
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122797631
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCGCTC3436996627.9891116140506No Hit
TCGATACT3378093127.50943216485992No Hit
AGATCTGG2961636324.118024719874278No Hit
GTTGAGAA2284597518.604573080078392No Hit
GGTGAGAA2519980.20521405661319314No Hit
CACCGCTA2519590.20518229704284768No Hit
AGATCTGA1517110.12354554299178623Illumina PCR Primer Index 9 (100% over 8bp)
CCCCGCTC1233510.10045063491493578No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)