FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410065

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410065
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116701879
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGCGT2891047824.772932747723797Illumina PCR Primer Index 6 (100% over 8bp)
GCAACAAA2878161424.662511218007037No Hit
TAGTTGTC2861041024.51580920989284No Hit
CGCCATCG2834352524.287119661543752No Hit
CGCCCTCG3219730.2758935869404468No Hit
CGCCATCA2815110.24122233713134988No Hit
GCACCAAA1289230.11047208588646631No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)