FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410068

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410068
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences125753955
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCTGAGT3435057727.31570311247865No Hit
GAGCACCG3195038925.407064930880306No Hit
CCTACGTA3191719025.380664965964687No Hit
ATAGTTAC2536144520.167512822956542No Hit
CCCACGTA2515410.20002631328772127No Hit
GAGCCCCG1512290.12025784795396693No Hit
GAGCACCA1506590.11980458189167888No Hit
TGCGGAGT1459950.11609575221709727No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)