FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410074

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410074
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121990326
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGATAGC3545415429.0630865270415No Hit
TATGAGCT2895708123.73719453786852No Hit
GGCTGTTG2760455822.62848121251844No Hit
ATACCCAA2752706822.56495978213879No Hit
GGCTGTTA3406010.2792032869885109No Hit
ATACCAAA2934930.24058711016150575No Hit
GATGAGCT1887180.15469915212784988No Hit
GGCTGGTG1359130.11141293285829895No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)