FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410083

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410083
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences131083463
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCAGAA4294539332.76186943581129No Hit
ATCTTACC3060951623.35116520380607No Hit
TATGGTGT2924258022.308366998207852No Hit
CGAACCTG2604482419.868886130968328No Hit
CGACCCTG2267930.17301419630636397No Hit
GATGGTGT2121430.16183811073102333No Hit
ATCTTACA1787280.1363467182736849No Hit
CGAACCTA1423850.1086216344467494No Hit
GCGCAGCA1352050.1031442082057292No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)