FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410086

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410086
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences128070167
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGTGGT3597170628.087498316450233No Hit
TCCTCCAA3415132526.666104839232386No Hit
AGGAGATG3036076323.706350753802017No Hit
CTACATCC2417948618.879873874139637No Hit
CGGAGATG9237610.7212928831427229No Hit
CTACATCA4829680.3771120248480663No Hit
TCCTCAAA3518350.27472049755350125No Hit
GATGGGGT1448360.1130911307392923No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)