FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410098

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410098
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113525739
Sequences flagged as poor quality0
Sequence length8
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTGTC3805039833.51697891171622No Hit
GAAACCCT3652825132.1761842924449No Hit
AGCGAAAG3536668631.15301103655445No Hit
CCGTGTGA11355101.0002225134160987No Hit
AGCGACAG8172810.7199081082396653No Hit
GAAACCCA1967040.17326819603438126No Hit
TTTCTGTA1189960.1048185204942819No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)