FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410101

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410101
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences142802957
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACGCCC4204720929.444214520011652No Hit
ACCGTATG3596184325.182841977144772No Hit
CTGACTGA3436072524.061634101876475No Hit
GATTAGAT2660132218.627991015620214No Hit
GAGTAGAT10490760.7346318465940449No Hit
TGACGCCA4795000.3357773606886866No Hit
GCTTAGAT2841330.19896856897718163No Hit
TGTCGCCC2382400.16683127927105879No Hit
ACCGGATG2357110.16506030753971013No Hit
ACCGTATA1590640.11138704921915586No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)