FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410104

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410104
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences139027696
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTTAGC3686675326.51756021332613No Hit
GAGACTAT3497579725.15743122147403No Hit
TCTCAGTG3290252623.66616648815068No Hit
ATAGGCCA3230708023.237873409050813No Hit
ATACGCCA1399860.10068928999585809No Hit
TCTCAGTA1394090.10027426477671039No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)