FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410107

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410107
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences133654880
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATACCC3645595527.27618699743698No Hit
ACCACGAA3281924524.555216390153507No Hit
TGTCTATG3152356623.585794996785754No Hit
GTGGGTGT3044389922.77799284246112No Hit
CAATACCA3825340.2862102753000863No Hit
ACCACAAA2346910.17559478561501085No Hit
GGGGGTGT2004820.14999976057739156No Hit
TGTCTATA1513150.11321322498662227No Hit
GGTCTATG1435240.1073840326668207No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)