FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410113

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410113
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences148404096
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTGGCT4247818528.623323846802716No Hit
CGGGCTTA4101396427.63667924637336No Hit
AAACAAAC3283581522.125949272990418No Hit
TTCATCGG2991360120.1568567217983No Hit
CGGGCTAA2443510.1646524635007379No Hit
AAACAAAA2359580.15899695922139506No Hit
TTCATCGA2146140.14461460686368116No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)