FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410116

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410116
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109146698
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCCAGC4044132037.052261535204664No Hit
CGATAGCT2547688723.34187608680567No Hit
GTCAGCTA2140690419.612965295569452No Hit
AATGTTAG2004932118.369150297153286No Hit
AATGGTAG1912650.17523663427729166No Hit
TCGCCAGA1329950.12184976956426112No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)