FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410122

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410122
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116901287
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGTACGC3319896128.39914072117957No Hit
CCCAGGAT2887120924.697083959392167No Hit
GTTCCTCA2810193524.039029613078597ABI Solid3 Adapter A (100% over 8bp)
TAAGTATG2500944021.393639575584828No Hit
CCCCGGAT2528840.21632268257234843No Hit
TAAGTATA1272690.10886877575607871No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)