FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410137

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410137
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences110071818
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAGAGC2816656625.589262094317366No Hit
CATCTCCA2714618624.662249150822603No Hit
TTATCGTT2615509623.761846106693724No Hit
GCGGATAG2608152423.69500610955658No Hit
GCGGCTAG5383470.48908704315213547No Hit
CATCTCAA2223940.20204445065130114No Hit
GTATCGTT1822470.16557099111418327No Hit
GCGGATAA1799470.16348144626810834No Hit
TTATCGTA1588150.14428307162147536No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)