FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410140

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410140
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122192055
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCCTT3690724930.20429519742507No Hit
TCACATCA2949768224.140425496567676Illumina PCR Primer Index 1 (100% over 8bp)
AGTGGAAC2812412623.016329498673215No Hit
CAGATGGG2576085521.08226676439806No Hit
GTCTCCTA2251180.18423292741905356No Hit
CAGATGGA1988750.16275608099069944No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)