FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410143

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410143
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114813269
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGTGGC3059050226.643699170345897No Hit
GGGTCAAG3051229726.575584221018918No Hit
TACCACCA2782009424.23073068322791No Hit
CTAAGTTT2354137420.504053412153954No Hit
GGGTCCAG6073590.5289972189538475No Hit
CTAAGTTA1979740.17243128927894213No Hit
TACCACAA1732310.15088064429208092No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)