FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410155

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410155
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences118089975
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCTGCC3533494429.922052231783436No Hit
TGATGCAT3239094227.429036207349522No Hit
GCTACTGA2664605522.564197341899682No Hit
ATGGAATG2190373518.54834417570162No Hit
CACCTGCA1921370.16270390437460927No Hit
ATGGACTG1283520.10869000522694666No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)