FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410158

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410158
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106146659
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGATTA2870895927.04650270716481No Hit
TGGAGGCT2787371926.259629141977985No Hit
GAATCCGC2544852223.97486858253353No Hit
ATTCTAAG2236502421.069927410527352No Hit
GAATCCGA1901800.17916720299222982No Hit
ATTCTCAG1368920.12896496346625475No Hit
CCCGATAA1238310.11666028979772222No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)