FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410161

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410161
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121159228
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGGCGTC4315437335.617900272524025No Hit
AACCGTAA2631183421.7167395619259No Hit
GGTTTACT2624538621.661896029908675No Hit
CTAAACGG2393594819.755777909050394No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)