FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410164

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410164
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences119453746
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGGAAG3193834826.73699994305746No Hit
AGTTCGGC3024476525.319226908128943No Hit
GTAATCTT2827255023.668198735266117No Hit
CAGCATCA2694857222.55983834948131No Hit
TCCGGCAG3319830.277917613399918No Hit
TCCGGACG2064700.17284514459680486No Hit
GTAATCTA1435200.12014692280977107No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)