FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410167

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410167
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116631863
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTGGCG3283632228.153817623576842No Hit
GGTAACGC2792826823.94565882909716No Hit
TTGGCATA2731507723.419909703405835No Hit
CCACTTAT2688127723.047970176040145No Hit
CCACGTAT1723350.1477597935651598No Hit
TTGGCGTA1291070.11069616542093647No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)