FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410176

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410176
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences129694357
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCAGC3362119225.923403899523557No Hit
ACCCTCCT3335519825.71831093622678No Hit
CAATGGAG2987335123.033655195961998No Hit
TGGAATTA2739306421.121245853433702No Hit
CAAGGGAG11896640.9172827773840615No Hit
CACTGGAG10761470.8297562244747472No Hit
CCATGGAG4396410.3389823660562194No Hit
GGGAATTA4389020.3384125648581611No Hit
CCCCTCCT3667000.2827416770337972No Hit
TCCCTCCT2207220.17018627880625523No Hit
ACCCTCCA2119850.16344967113719527No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)