FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410188

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410188
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121103014
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTCTGT3254139726.870839895033495No Hit
CCTAGACC3125789025.810992614931944No Hit
TAGCTCTA2954340924.395271450469433No Hit
GGAGAGAG2180941818.008980354526933No Hit
GGAGCGAG38687503.194594314556036No Hit
GGCGAGAG1988490.16419822548760019No Hit
CTCTCTGT1879850.1552273504935228No Hit
CCTAGACA1605260.1325532657676051No Hit
TTCTCTGT1322060.1091682160775949No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)