FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113739343
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTCCTC3286792728.89758823382688ABI Solid3 Adapter A (100% over 8bp)
CCGGGTAT3021934026.56894193594911No Hit
TAACAAGG2801335724.629434513262485No Hit
ATCATGCA2064238118.14884845958711No Hit
GGGTCCTC1750040.15386408553458938No Hit
CCGGGGAT1586160.13945570267624985No Hit
GGTTCCTA1268220.11150231455091138No Hit
ATCATGAA1165120.10243772904508512No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)