FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410197

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410197
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122964675
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGATAC3951871932.138269791710506No Hit
ACGCGGGT3552404228.88963192071219No Hit
TTTACATG2508917120.403559802845816No Hit
GAATTCCA2131808517.33675545436118Illumina Small RNA Adapter 2 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)