FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410200

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410200
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122487851
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCACT3739068230.526033149197794No Hit
GTCGATGC2875836923.478548088822297No Hit
ACTAGGAG2607405221.287051562362702No Hit
TGATTCTA2541160820.746227313597004No Hit
ACTCGGAG21631141.7659824891531488No Hit
CAGCCACA6832250.5577900129866757No Hit
CAGCCCCT2450100.20002800114437472No Hit
ACGAGGAG1959560.15997994772559118No Hit
TGTTTCTA1278480.1043760658352966No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)