FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410206

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410206
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122756865
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGCCT3829046431.192116220954325No Hit
TGTGCGGG3734106330.418716704764332No Hit
ACCATAAC2938835023.940290426934574No Hit
GTGTATTA1566768712.763185993712042No Hit
GGGTATTA2557070.20830362521884216No Hit
TGTGCGGA2221270.18094873960816774No Hit
CAACGCCA1784670.1453825006039377No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)